PSME_00004922-RA

Description : (at1g12280 : 266.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 496.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00004922-RA
Cluster	HCCA clusters: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
Brara.A01692.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU3Hr1G077670.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU3Hr1G108500.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os03g10900	No alias	disease resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_10062820g0010	No alias	(at1g12280 : 143.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
MA_10431079g0020	No alias	(at1g12280 : 99.8) LRR and NB-ARC domains-containing...	0.02	Orthogroups_2024-Update
MA_10435995g0040	No alias	(at4g27190 : 188.0) NB-ARC domain-containing disease...	0.03	Orthogroups_2024-Update
MA_10436684g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_674039g0010	No alias	(at5g63020 : 154.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_8869735g0010	No alias	(at1g61300 : 128.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
MA_90078g0010	No alias	(at1g12220 : 94.7) Resistance gene, mediates resistance...	0.03	Orthogroups_2024-Update
MA_9432601g0010	No alias	(at5g63020 : 105.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00000174-RA	No alias	(at1g63350 : 147.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
PSME_00004005-RA	No alias	(at1g15890 : 219.0) Disease resistance protein...	0.05	Orthogroups_2024-Update
PSME_00005482-RA	No alias	(at4g27220 : 208.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00009853-RA	No alias	(at1g12280 : 271.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00011882-RA	No alias	(at1g12220 : 145.0) Resistance gene, mediates resistance...	0.01	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00018989-RA	No alias	(at4g26090 : 240.0) Encodes a plasma membrane protein...	0.05	Orthogroups_2024-Update
PSME_00027915-RA	No alias	(at1g15890 : 191.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00027916-RA	No alias	(at4g27220 : 83.6) NB-ARC domain-containing disease...	0.03	Orthogroups_2024-Update
PSME_00033120-RA	No alias	(at1g63350 : 267.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00033628-RA	No alias	(at4g27220 : 254.0) NB-ARC domain-containing disease...	0.07	Orthogroups_2024-Update
PSME_00037099-RA	No alias	(at4g26090 : 230.0) Encodes a plasma membrane protein...	0.04	Orthogroups_2024-Update
PSME_00040940-RA	No alias	(at1g12220 : 181.0) Resistance gene, mediates resistance...	0.04	Orthogroups_2024-Update
PSME_00043407-RA	No alias	(at4g26090 : 135.0) Encodes a plasma membrane protein...	0.03	Orthogroups_2024-Update
PSME_00050940-RA	No alias	(at1g12280 : 221.0) LRR and NB-ARC domains-containing...	0.05	Orthogroups_2024-Update
Potri.011G124100	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T013200	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T013900	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T014500	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T026800	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Seita.7G165000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.006G146500.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sopen10g028090	No alias	NB-ARC domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004784	superoxide dismutase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
BP	GO:0006534	cysteine metabolic process	IEP	Predicted GO
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Predicted GO
BP	GO:0006563	L-serine metabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Predicted GO
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016412	serine O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016413	O-acetyltransferase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predicted GO
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
BP	GO:0019344	cysteine biosynthetic process	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	586	644
IPR002182	NB-ARC	209	451

External Links

No external refs found!

PSME_00004922-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation