PSME_00004928-RA

Description : (at1g27170 : 138.0) transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description)

Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00004928-RA
Cluster	HCCA clusters: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16559	No alias	tmv resistance protein n	0.02	Orthogroups_2024-Update
A4A49_22862	No alias	tmv resistance protein n	0.03	Orthogroups_2024-Update
A4A49_22883	No alias	tmv resistance protein n	0.04	Orthogroups_2024-Update
A4A49_22884	No alias	tmv resistance protein n	0.02	Orthogroups_2024-Update
At1g17615	No alias	Disease resistance protein (TIR-NBS class)...	0.02	Orthogroups_2024-Update
At1g72860	No alias	Disease resistance protein (TIR-NBS-LRR class) family...	0.02	Orthogroups_2024-Update
At1g72890	No alias	Disease resistance protein (TIR-NBS class)...	0.02	Orthogroups_2024-Update
At4g16860	No alias	Disease resistance protein RPP4...	0.03	Orthogroups_2024-Update
At4g16950	No alias	Disease resistance protein RPP5...	0.02	Orthogroups_2024-Update
At5g38350	No alias	Disease resistance protein (NBS-LRR class) family...	0.02	Orthogroups_2024-Update
At5g48770	No alias	Disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9FKB9]	0.03	Orthogroups_2024-Update
Brara.B00725.1	No alias	effector receptor *(NLR)	0.03	Orthogroups_2024-Update
Brara.I03480.1	No alias	effector receptor *(NLR)	0.03	Orthogroups_2024-Update
Glyma.01G033200	No alias	disease resistance protein (TIR-NBS-LRR class)	0.02	Orthogroups_2024-Update
Glyma.03G047900	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update
Glyma.06G265400	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.02	Orthogroups_2024-Update
Glyma.10G184300	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.02	Orthogroups_2024-Update
Glyma.12G132400	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.03	Orthogroups_2024-Update
Glyma.16G215300	No alias	transmembrane receptors;ATP binding	0.03	Orthogroups_2024-Update
Glyma.18G116601	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update
Glyma.19G054900	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
MA_26170g0010	No alias	(at5g36930 : 147.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_40074g0010	No alias	(at5g36930 : 198.0) Disease resistance protein...	0.02	Orthogroups_2024-Update
PSME_00006143-RA	No alias	(at5g36930 : 223.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
PSME_00043800-RA	No alias	(at5g36930 : 119.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
Potri.001G066500	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.02	Orthogroups_2024-Update
Potri.011G013201	No alias	transmembrane receptors;ATP binding	0.02	Orthogroups_2024-Update
Potri.011G060600	No alias	transmembrane receptors;ATP binding	0.03	Orthogroups_2024-Update
Potri.T002600	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
Solyc09g007710	No alias	Disease resistance protein (TIR-NBS-LRR class) family...	0.02	Orthogroups_2024-Update
Sopen02g010550	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0007165	signal transduction	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004568	chitinase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006281	DNA repair	IEP	Predicted GO
BP	GO:0006298	mismatch repair	IEP	Predicted GO
MF	GO:0008061	chitin binding	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
BP	GO:0018298	protein-chromophore linkage	IEP	Predicted GO
MF	GO:0030983	mismatched DNA binding	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predicted GO
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000157	TIR_dom	81	242

External Links

No external refs found!

PSME_00004928-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation