- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at4g03000 : 229.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G03365.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description)
Gene families : OG_42_0001015 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001015_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00005005-RA | |
| Cluster | HCCA clusters: Cluster_98 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Glyma.02G150400 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.05G112600 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
| MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| CC | GO:0005875 | microtubule associated complex | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
| BP | GO:0007017 | microtubule-based process | IEP | Predicted GO |
| BP | GO:0007051 | spindle organization | IEP | Predicted GO |
| BP | GO:0008104 | protein localization | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| BP | GO:0015031 | protein transport | IEP | Predicted GO |
| BP | GO:0015833 | peptide transport | IEP | Predicted GO |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
| BP | GO:0022402 | cell cycle process | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| CC | GO:0030117 | membrane coat | IEP | Predicted GO |
| CC | GO:0030120 | vesicle coat | IEP | Predicted GO |
| CC | GO:0030126 | COPI vesicle coat | IEP | Predicted GO |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Predicted GO |
| MF | GO:0031369 | translation initiation factor binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
| BP | GO:0042886 | amide transport | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044425 | membrane part | IEP | Predicted GO |
| CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
| CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
| CC | GO:0044433 | cytoplasmic vesicle part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
| BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
| BP | GO:0051225 | spindle assembly | IEP | Predicted GO |
| BP | GO:0051641 | cellular localization | IEP | Predicted GO |
| BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
| CC | GO:0070652 | HAUS complex | IEP | Predicted GO |
| BP | GO:0070925 | organelle assembly | IEP | Predicted GO |
| BP | GO:0071702 | organic substance transport | IEP | Predicted GO |
| BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
| MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |