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  5. PSME_00005080-RA

PSME_00005080-RA


Description : (at5g13010 : 1519.0) embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 3038.0) & (original description: no original description)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005080-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
82212 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Brara.B03286.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K01162.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre07.g349100 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Cre24.g755347 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.06G201700 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.13G342400 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
MA_34468g0010 No alias (at3g62310 : 1196.0) RNA helicase family protein;... 0.04 Orthogroups_2024-Update
Seita.2G326100.1 No alias RNA helicase *(Prp16) 0.02 Orthogroups_2024-Update
Seita.8G109400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G313400.1 No alias RNA helicase *(Prp16) 0.04 Orthogroups_2024-Update
Sopen01g039450 No alias Helicase associated domain (HA2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 1199 1276
IPR007502 Helicase-assoc_dom 1055 1141
IPR001650 Helicase_C 865 991
IPR011545 DEAD/DEAH_box_helicase_dom 668 815
No external refs found!