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  5. PSME_00005218-RA

PSME_00005218-RA


Description : (at1g69850 : 566.0) Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.; nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink). & (reliability: 1132.0) & (original description: no original description)


Gene families : OG_42_0001620 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001620_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005218-RA
Cluster HCCA clusters: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
At1g27040 No alias Protein NRT1/ PTR FAMILY 4.5... 0.03 Orthogroups_2024-Update
GRMZM2G137421 No alias nitrate transporter 1:2 0.03 Orthogroups_2024-Update
Glyma.04G036100 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G036200 No alias nitrate transporter 1:2 0.02 Orthogroups_2024-Update
PSME_00020038-RA No alias (at1g27040 : 489.0) Major facilitator superfamily... 0.02 Orthogroups_2024-Update
Sobic.010G175900.2 No alias abscisic acid transporter *(AIT) & anion transporter *(NRT1/PTR) 0.04 Orthogroups_2024-Update
Solyc04g079520 No alias Major facilitator superfamily protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0022857 transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000109 POT_fam 99 533
No external refs found!