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  5. PSME_00005341-RA

PSME_00005341-RA


Description : (q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1342.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2684.0) & (original description: no original description)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005341-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
A4A49_26399 No alias chaperone protein clpb1 0.02 Orthogroups_2024-Update
Bradi2g49660 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Brara.G03189.1 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.04 Orthogroups_2024-Update
GRMZM2G360681 No alias heat shock protein 101 0.06 Orthogroups_2024-Update
Glyma.04G062200 No alias casein lytic proteinase B4 0.04 Orthogroups_2024-Update
Glyma.05G022200 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.06 Orthogroups_2024-Update
HORVU1Hr1G076190.4 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
HORVU3Hr1G071120.7 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
HORVU6Hr1G028690.3 No alias organellar chaperone *(Clp-p/Clp-m) 0.06 Orthogroups_2024-Update
LOC_Os02g08490 No alias chaperone protein clpB 1, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.02 Orthogroups_2024-Update
PSME_00004919-RA No alias (at2g25140 : 1357.0) Encodes ClpB4, which belongs to the... 0.05 Orthogroups_2024-Update
PSME_00013547-RA No alias (at1g74310 : 529.0) Encodes ClpB1, which belongs to the... 0.03 Orthogroups_2024-Update
Potri.015G056900 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Sobic.009G201500.1 No alias cytosolic chaperone *(Hsp101) 0.02 Orthogroups_2024-Update
Solyc03g115230 No alias Solanum lycopersicum heat shock protein 0.04 Orthogroups_2024-Update
Sopen03g034270 No alias AAA domain (Cdc48 subfamily) 0.04 Orthogroups_2024-Update
Sopen03g037240 No alias AAA domain (Cdc48 subfamily) 0.02 Orthogroups_2024-Update
evm.model.contig_3516.2 No alias (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... 0.04 Orthogroups_2024-Update
evm.model.contig_487.1 No alias (p35100|clpc_pea : 624.0) ATP-dependent Clp protease... 0.01 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 596 761
IPR019489 Clp_ATPase_C 767 846
IPR003959 ATPase_AAA_core 204 317
IPR004176 Clp_N 19 60
IPR004176 Clp_N 97 147
No external refs found!