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  5. PSME_00005363-RA

PSME_00005363-RA


Description : (at1g55740 : 295.0) seed imbibition 1 (SIP1); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1); Has 563 Blast hits to 527 proteins in 159 species: Archae - 29; Bacteria - 119; Metazoa - 0; Fungi - 82; Plants - 322; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description)


Gene families : OG_42_0000676 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005363-RA
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Bradi1g48050 No alias Raffinose synthase family protein 0.04 Orthogroups_2024-Update
Glyma.05G003900 No alias Raffinose synthase family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G016430.3 No alias raffinose synthase 0.03 Orthogroups_2024-Update
LOC_Os06g07600 No alias uncharacterized glycosyltransferase, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s10_132V6 No alias imbibition protein homolog 0.02 Orthogroups_2024-Update
Seita.4G056900.1 No alias galactinol-sucrose galactosyltransferase 0.03 Orthogroups_2024-Update
Solyc07g065980 No alias alkaline alpha-galactosidase seed imbibition protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 149 330
IPR008811 Glycosyl_hydrolases_36 14 123
No external refs found!