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  5. PSME_00005384-RA

PSME_00005384-RA


Description : (at3g12770 : 639.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 120.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1278.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005384-RA
Cluster HCCA clusters: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
At2g17210 No alias Pentatricopeptide repeat-containing protein At2g17210... 0.03 Orthogroups_2024-Update
Bradi4g19150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.D02053.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.20G013300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_778985g0010 No alias (at2g27610 : 621.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_835083g0010 No alias (at1g11290 : 592.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.002G155100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc03g119120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 40 86
IPR002885 Pentatricopeptide_repeat 141 183
IPR002885 Pentatricopeptide_repeat 242 289
IPR002885 Pentatricopeptide_repeat 343 390
IPR002885 Pentatricopeptide_repeat 417 441
IPR002885 Pentatricopeptide_repeat 486 512
IPR032867 DYW_dom 517 640
No external refs found!