PSME_00005628-RA

Description : (at4g38430 : 142.0) Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.; rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)

Gene families : OG_42_0000202 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000202_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00005628-RA
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g54980	No alias	RHO guanyl-nucleotide exchange factor 7	0.02	Orthogroups_2024-Update
Pp1s58_274V6	No alias	hypothetical protein similar to Arabidopsis thaliana...	0.01	Orthogroups_2024-Update
Sopen08g023750	No alias	PRONE (Plant-specific Rop nucleotide exchanger)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	None	Extended
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	None	Extended
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0017048	Rho GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005512	PRONE_dom	104	137
IPR005512	PRONE_dom	3	103

External Links

No external refs found!

PSME_00005628-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation