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  5. PSME_00005683-RA

PSME_00005683-RA


Description : (p93508|calr_ricco : 548.0) Calreticulin precursor - Ricinus communis (Castor bean) & (at1g09210 : 546.0) Encodes one of three Arabidopsis calreticulins.; calreticulin 1b (CRT1b); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1); Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6; Bacteria - 291; Metazoa - 2217; Fungi - 528; Plants - 416; Viruses - 176; Other Eukaryotes - 1873 (source: NCBI BLink). & (reliability: 1092.0) & (original description: no original description)


Gene families : OG_42_0001219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005683-RA
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
144212 No alias calreticulin 1a 0.02 Orthogroups_2024-Update
Glyma.09G248600 No alias calreticulin 3 0.03 Orthogroups_2024-Update
LOC_Os01g67054 No alias calreticulin precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g14270 No alias calreticulin precursor protein, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
CC GO:0005783 endoplasmic reticulum IEA InterProScan predictions
BP GO:0006457 protein folding IEA InterProScan predictions
MF GO:0051082 unfolded protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001580 Calret/calnex 287 360
IPR001580 Calret/calnex 52 285
No external refs found!