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  5. PSME_00005771-RA

PSME_00005771-RA


Description : (at1g24090 : 99.8) RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)


Gene families : OG_42_0002280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005771-RA
Cluster HCCA clusters: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
PSME_00001630-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00006193-RA No alias (at1g24090 : 100.0) RNase H family protein; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00007075-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00009061-RA No alias (at3g01410 : 89.7) Polynucleotidyl transferase,... 0.04 Orthogroups_2024-Update
PSME_00013442-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00017604-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00019861-RA No alias (at1g24090 : 97.1) RNase H family protein; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
PSME_00025008-RA No alias (at1g24090 : 101.0) RNase H family protein; FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00027410-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00043719-RA No alias (at3g09510 : 83.2) Ribonuclease H-like superfamily... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 10 79
IPR002156 RNaseH_domain 225 345
No external refs found!