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  5. PSME_00005888-RA

PSME_00005888-RA


Description : (at1g70370 : 367.0) polygalacturonase 2 (PG2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT1G23760.1). & (reliability: 734.0) & (original description: no original description)


Gene families : OG_42_0001780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001780_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005888-RA
Cluster HCCA clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
A4A49_29052 No alias polygalacturonase 1 beta-like protein 3 0.02 Orthogroups_2024-Update
At1g23760 No alias Polygalacturonase 1 beta-like protein 1... 0.03 Orthogroups_2024-Update
At1g60390 No alias Polygalacturonase 1 beta-like protein 2... 0.03 Orthogroups_2024-Update
MA_19057g0010 No alias (at1g60390 : 524.0) polygalacturonase 1 (PG1); FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00024493-RA No alias (at1g70370 : 272.0) polygalacturonase 2 (PG2); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.012G079200 No alias polygalacturonase 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004873 BURP_dom 349 542
No external refs found!