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  5. PSME_00005980-RA

PSME_00005980-RA


Description : (at5g23850 : 467.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 934.0) & (original description: no original description)


Gene families : OG_42_0000511 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00005980-RA
Cluster HCCA clusters: Cluster_667

Target Alias Description ECC score Gene Family Method Actions
Brara.G01914.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.18G062600 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.03 Orthogroups_2024-Update
LOC_Os02g42920 No alias DTA2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g45140 No alias DTA2, putative, expressed 0.02 Orthogroups_2024-Update
Mp7g04800.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Seita.4G071200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G032300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G044700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen03g004590 No alias Glycosyl transferase family 90 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006598 LipoPS_modifying 149 541
No external refs found!