PSME_00006143-RA

Description : (at5g36930 : 223.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 406.0) & (original description: no original description)

Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00006143-RA
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
At1g17615	No alias	Disease resistance protein (TIR-NBS class)...	0.03	Orthogroups_2024-Update
At1g66090	No alias	Disease resistance protein (TIR-NBS class)...	0.03	Orthogroups_2024-Update
At4g16860	No alias	Disease resistance protein RPP4...	0.03	Orthogroups_2024-Update
Brara.C00456.1	No alias	effector receptor *(NLR)	0.03	Orthogroups_2024-Update
Brara.C00509.1	No alias	effector receptor *(NLR)	0.02	Orthogroups_2024-Update
Brara.I01255.1	No alias	effector receptor *(NLR)	0.03	Orthogroups_2024-Update
Brara.I01803.1	No alias	effector receptor *(NLR)	0.04	Orthogroups_2024-Update
Brara.K01764.1	No alias	effector receptor *(NLR)	0.04	Orthogroups_2024-Update
Glyma.03G047900	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
Glyma.06G264300	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.04	Orthogroups_2024-Update
Glyma.18G116601	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
MA_10427411g0010	No alias	(at1g27170 : 153.0) transmembrane receptors;ATP binding;...	0.03	Orthogroups_2024-Update
MA_10435825g0020	No alias	(at5g17680 : 205.0) disease resistance protein...	0.03	Orthogroups_2024-Update
MA_164062g0010	No alias	(at1g27170 : 290.0) transmembrane receptors;ATP binding;...	0.03	Orthogroups_2024-Update
MA_30664g0020	No alias	(at5g36930 : 82.8) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_390667g0010	No alias	(at5g36930 : 227.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_5818965g0010	No alias	(at1g27180 : 125.0) disease resistance protein...	0.02	Orthogroups_2024-Update
MA_741636g0010	No alias	(at1g27170 : 144.0) transmembrane receptors;ATP binding;...	0.03	Orthogroups_2024-Update
MA_9114192g0010	No alias	(at3g04220 : 155.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_96620g0010	No alias	(at1g27170 : 193.0) transmembrane receptors;ATP binding;...	0.03	Orthogroups_2024-Update
PSME_00004928-RA	No alias	(at1g27170 : 138.0) transmembrane receptors;ATP binding;...	0.04	Orthogroups_2024-Update
PSME_00006302-RA	No alias	(at1g72840 : 118.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
PSME_00018710-RA	No alias	(at1g69550 : 113.0) disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00031650-RA	No alias	(at5g36930 : 116.0) Disease resistance protein...	0.05	Orthogroups_2024-Update
Potri.011G012750	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
Potri.T002066	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.03	Orthogroups_2024-Update
Potri.T004950	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.04	Orthogroups_2024-Update
Potri.T077532	No alias	disease resistance protein (TIR-NBS-LRR class), putative	0.03	Orthogroups_2024-Update
Solyc12g096880	No alias	Disease resistance protein (TIR-NBS-LRR class) family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0007165	signal transduction	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004126	cytidine deaminase activity	IEP	Predicted GO
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006216	cytidine catabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
BP	GO:0009116	nucleoside metabolic process	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0009164	nucleoside catabolic process	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0009972	cytidine deamination	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042454	ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046087	cytidine metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predicted GO
BP	GO:1901658	glycosyl compound catabolic process	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000157	TIR_dom	14	178
IPR002182	NB-ARC	202	342

External Links

No external refs found!

PSME_00006143-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation