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  5. PSME_00006146-RA

PSME_00006146-RA


Description : (at5g42690 : 117.0) Protein of unknown function, DUF547; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 830 Blast hits to 816 proteins in 172 species: Archae - 4; Bacteria - 246; Metazoa - 31; Fungi - 0; Plants - 470; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (gnl|cdd|38754 : 84.0) no description available & (reliability: 234.0) & (original description: no original description)


Gene families : OG_42_0000727 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000727_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00006146-RA
Cluster HCCA clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
PSME_00012980-RA No alias (at4g37080 : 234.0) Protein of unknown function, DUF547;... 0.01 Orthogroups_2024-Update
PSME_00024563-RA No alias (at4g37080 : 199.0) Protein of unknown function, DUF547;... 0.01 Orthogroups_2024-Update
PSME_00026188-RA No alias (at4g37080 : 202.0) Protein of unknown function, DUF547;... 0.01 Orthogroups_2024-Update
Solyc04g079340 No alias transcription factor, putative (Protein of unknown... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006869 DUF547 957 986
IPR025757 MIP1_Leuzipper 53 125
IPR025757 MIP1_Leuzipper 423 494
No external refs found!