1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00006359-RA

PSME_00006359-RA


Description : (q6z2t3|lsi1_orysa : 154.0) Silicon transporter LSI1 (Low silicon protein 1) - Oryza sativa (Rice) & (at1g80760 : 140.0) Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.; NOD26-like intrinsic protein 6;1 (NIP6;1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 5;1 (TAIR:AT4G10380.1); Has 10266 Blast hits to 10221 proteins in 2131 species: Archae - 103; Bacteria - 5136; Metazoa - 1354; Fungi - 440; Plants - 2031; Viruses - 2; Other Eukaryotes - 1200 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)


Gene families : OG_42_0000209 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000209_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00006359-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
173700 No alias NOD26-like intrinsic protein 6;1 0.03 Orthogroups_2024-Update
Bradi3g08930 No alias NOD26-like intrinsic protein 1;2 0.02 Orthogroups_2024-Update
Glyma.02G246700 No alias NOD26-like intrinsic protein 4;2 0.02 Orthogroups_2024-Update
Glyma.13G089300 No alias NOD26-like intrinsic protein 1;2 0.03 Orthogroups_2024-Update
Glyma.13G224900 No alias NOD26-like intrinsic protein 1;2 0.02 Orthogroups_2024-Update
HORVU7Hr1G038220.1 No alias Nodulin-26-like intrinsic protein *(NIP) 0.02 Orthogroups_2024-Update
HORVU7Hr1G038270.1 No alias Nodulin-26-like intrinsic protein *(NIP) 0.02 Orthogroups_2024-Update
MA_10428302g0020 No alias (q6z2t3|lsi1_orysa : 154.0) Silicon transporter LSI1... 0.08 Orthogroups_2024-Update
Solyc01g079890 No alias NOD26-like intrinsic protein 7.1 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000425 MIP 105 260
No external refs found!