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  5. PSME_00006387-RA

PSME_00006387-RA


Description : (at1g06920 : 100.0) ovate family protein 4 (OFP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 2 (TAIR:AT2G30400.1); Has 524 Blast hits to 514 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)


Gene families : OG_42_0000150 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000150_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00006387-RA
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G053985 No alias ovate family protein 8 0.02 Orthogroups_2024-Update
HORVU1Hr1G074020.1 No alias transcriptional co-regulator *(OFP) 0.02 Orthogroups_2024-Update
Sobic.003G227000.1 No alias transcriptional co-regulator *(OFP) 0.03 Orthogroups_2024-Update
Sobic.003G296100.1 No alias transcriptional co-regulator *(OFP) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025830 DNA_bnd_dom_ovate 1 39
IPR006458 Ovate_C 458 514
No external refs found!