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PSME_00006452-RA


Description : (at1g26370 : 840.0) RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 9899 Blast hits to 9180 proteins in 1561 species: Archae - 2; Bacteria - 3369; Metazoa - 2309; Fungi - 1230; Plants - 848; Viruses - 465; Other Eukaryotes - 1676 (source: NCBI BLink). & (reliability: 1680.0) & (original description: no original description)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00006452-RA
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Pp1s124_4V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Pp1s22_343V6 No alias No description available 0.03 Orthogroups_2024-Update
Sobic.010G059500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
evm.model.tig00000113.111 No alias (at1g33390 : 274.0) Over-expression of this gene results... 0.01 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update
evm.model.tig00022075.25 No alias (at3g62310 : 1059.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 654 729
IPR001650 Helicase_C 297 426
IPR007502 Helicase-assoc_dom 488 577
No external refs found!