Description : (at3g11910 : 1264.0) ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.2). & (reliability: 2528.0) & (original description: no original description)
Gene families : OG_42_0001109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001109_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00006859-RA | |
Cluster | HCCA clusters: Cluster_86 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_29870 | No alias | ubiquitin carboxyl-terminal hydrolase 12 | 0.02 | Orthogroups_2024-Update | |
At3g11910 | No alias | UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0] | 0.02 | Orthogroups_2024-Update | |
Bradi1g56780 | No alias | ubiquitin-specific protease 12 | 0.02 | Orthogroups_2024-Update | |
Bradi2g51255 | No alias | ubiquitin-specific protease 13 | 0.04 | Orthogroups_2024-Update | |
Bradi4g07167 | No alias | ubiquitin-specific protease 12 | 0.05 | Orthogroups_2024-Update | |
Bradi4g15710 | No alias | ubiquitin-specific protease 12 | 0.05 | Orthogroups_2024-Update | |
GRMZM2G014805 | No alias | ubiquitin-specific protease 12 | 0.03 | Orthogroups_2024-Update | |
Glyma.10G120900 | No alias | ubiquitin-specific protease 13 | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G075220.5 | No alias | deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13) | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G031980.11 | No alias | deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13) | 0.04 | Orthogroups_2024-Update | |
Kfl00179_0090 | kfl00179_0090_v1.... | (at5g06600 : 1295.0) Encodes a ubiquitin-specific... | 0.02 | Orthogroups_2024-Update | |
Pp1s104_2V6 | No alias | ubiquitin carboxyl-terminal | 0.03 | Orthogroups_2024-Update | |
Pp1s123_138V6 | No alias | ubiquitin carboxyl-terminal | 0.03 | Orthogroups_2024-Update | |
Seita.8G159100.1 | No alias | deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G310900.1 | No alias | deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00021350.29 | No alias | (at5g06600 : 152.0) Encodes a ubiquitin-specific... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
BP | GO:0016579 | protein deubiquitination | IEA | InterProScan predictions |
MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0048193 | Golgi vesicle transport | IEP | Predicted GO |
No external refs found! |