1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00007003-RA

PSME_00007003-RA


Description : (at3g48390 : 352.0) MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1943 Blast hits to 788 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 1171; Fungi - 12; Plants - 600; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). & (reliability: 686.0) & (original description: no original description)


Gene families : OG_42_0001101 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007003-RA
Cluster HCCA clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
At1g22730 No alias MA3 domain-containing protein... 0.02 Orthogroups_2024-Update
LOC_Os04g40660 No alias MA3 domain containing protein, expressed 0.01 Orthogroups_2024-Update
PSME_00001872-RA No alias (at4g24800 : 474.0) MA3 domain-containing protein;... 0.04 Orthogroups_2024-Update
PSME_00003998-RA No alias (at4g24800 : 238.0) MA3 domain-containing protein;... 0.07 Orthogroups_2024-Update
PSME_00006781-RA No alias (at1g22730 : 96.7) MA3 domain-containing protein;... 0.02 Orthogroups_2024-Update
Sopen03g030760 No alias MA3 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003891 Initiation_fac_eIF4g_MI 587 696
IPR003891 Initiation_fac_eIF4g_MI 239 351
IPR003891 Initiation_fac_eIF4g_MI 75 185
IPR003891 Initiation_fac_eIF4g_MI 916 1025
IPR003891 Initiation_fac_eIF4g_MI 775 816
IPR003891 Initiation_fac_eIF4g_MI 420 466
No external refs found!