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  5. PSME_00007066-RA

PSME_00007066-RA


Description : (at1g02800 : 663.0) Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.; cellulase 2 (CEL2); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2; Bacteria - 651; Metazoa - 181; Fungi - 17; Plants - 925; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). & (q8lq92|gun3_orysa : 631.0) Endoglucanase 3 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 3) (OsGLU8) - Oryza sativa (Rice) & (reliability: 1326.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007066-RA
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_18847 No alias endoglucanase 6 0.02 Orthogroups_2024-Update
At1g22880 No alias Endoglucanase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q2V4L8] 0.05 Orthogroups_2024-Update
At1g71380 No alias Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q0V7W1] 0.02 Orthogroups_2024-Update
At2g44540 No alias Endoglucanase 12 [Source:UniProtKB/Swiss-Prot;Acc:O64889] 0.03 Orthogroups_2024-Update
At4g09740 No alias Endoglucanase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ90] 0.02 Orthogroups_2024-Update
At4g38990 No alias Endoglucanase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ4] 0.03 Orthogroups_2024-Update
Bradi1g54580 No alias cellulase 2 0.05 Orthogroups_2024-Update
Brara.I03254.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
GRMZM2G143747 No alias glycosyl hydrolase 9C2 0.03 Orthogroups_2024-Update
GRMZM2G154678 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
GRMZM2G331566 No alias glycosyl hydrolase 9B13 0.02 Orthogroups_2024-Update
Glyma.05G236400 No alias glycosyl hydrolase 9B1 0.02 Orthogroups_2024-Update
Glyma.06G056700 No alias glycosyl hydrolase 9A4 0.04 Orthogroups_2024-Update
Glyma.14G019900 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
HORVU1Hr1G079980.1 No alias class-B endo-1,4-beta-glucanase 0.07 Orthogroups_2024-Update
HORVU6Hr1G073570.3 No alias class-B endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
LOC_Os04g57860 No alias endoglucanase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431918g0010 No alias (q69nf5|gun23_orysa : 580.0) Endoglucanase 23 precursor... 0.02 Orthogroups_2024-Update
MA_195523g0010 No alias (at3g43860 : 298.0) glycosyl hydrolase 9A4 (GH9A4);... 0.05 Orthogroups_2024-Update
PSME_00006676-RA No alias (at4g02290 : 363.0) glycosyl hydrolase 9B13 (GH9B13);... 0.08 Orthogroups_2024-Update
PSME_00013360-RA No alias (at1g02800 : 658.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
PSME_00029529-RA No alias (at1g64390 : 682.0) glycosyl hydrolase 9C2 (GH9C2);... 0.03 Orthogroups_2024-Update
Potri.001G092200 No alias glycosyl hydrolase 9C2 0.02 Orthogroups_2024-Update
Potri.008G132700 No alias glycosyl hydrolase 9B1 0.02 Orthogroups_2024-Update
Potri.014G126900 No alias glycosyl hydrolase 9B13 0.02 Orthogroups_2024-Update
Pp1s100_137V6 No alias endo- -beta- 0.03 Orthogroups_2024-Update
Pp1s100_139V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Seita.2G287600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G148500.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Sobic.006G090900.1 No alias class-B endo-1,4-beta-glucanase 0.04 Orthogroups_2024-Update
Solyc11g040340 No alias LEE14BDGL L.esculentum endo-1,4-beta-D-glucanase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 31 483
No external refs found!