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  5. PSME_00007097-RA

PSME_00007097-RA


Description : "(at1g56170 : 141.0) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues; ""nuclear factor Y, subunit C2"" (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 282.0) & (original description: no original description)"


Gene families : OG_42_0000527 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007097-RA
Cluster HCCA clusters: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
At5g38140 No alias Nuclear transcription factor Y subunit C-10... 0.02 Orthogroups_2024-Update
Glyma.10G155900 No alias nuclear factor Y, subunit C9 0.03 Orthogroups_2024-Update
Glyma.13G207500 No alias nuclear factor Y, subunit C1 0.03 Orthogroups_2024-Update
Kfl00591_0040 kfl00591_0040_v1.1 "(at3g48590 : 179.0) Encodes a protein with similarity... 0.03 Orthogroups_2024-Update
MA_11029g0010 No alias "(at1g56170 : 189.0) Encodes a protein with similarity... 0.03 Orthogroups_2024-Update
Sobic.001G435500.1 No alias component *(NF-YC) of NF-Y transcription factor complex 0.03 Orthogroups_2024-Update
Sopen01g031630 No alias Histone-like transcription factor (CBF/NF-Y) and archaeal histone 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 1 54
No external refs found!