1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00007150-RA

PSME_00007150-RA


Description : (at4g36220 : 340.0) encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.; ferulic acid 5-hydroxylase 1 (FAH1); FUNCTIONS IN: ferulate 5-hydroxylase activity, monooxygenase activity; INVOLVED IN: lignin biosynthetic process, response to UV-B, phenylpropanoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G04330.1); Has 34463 Blast hits to 34198 proteins in 1764 species: Archae - 58; Bacteria - 4180; Metazoa - 12146; Fungi - 7203; Plants - 9525; Viruses - 6; Other Eukaryotes - 1345 (source: NCBI BLink). & (o48923|c71da_soybn : 318.0) Cytochrome P450 71D10 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 680.0) & (original description: no original description)


Gene families : OG_42_0000031 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007150-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
111331 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
115322 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
124314 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
421431 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
86204 No alias cytochrome P450, family 71, subfamily B, polypeptide 37 0.03 Orthogroups_2024-Update
A4A49_04893 No alias cytochrome p450 71a9 0.03 Orthogroups_2024-Update
A4A49_26398 No alias flavonoid 3'-monooxygenase 0.03 Orthogroups_2024-Update
Bradi2g07597 No alias cytochrome P450, family 71, subfamily A, polypeptide 24 0.03 Orthogroups_2024-Update
Bradi4g39240 No alias cytochrome P450, family 71, subfamily B, polypeptide 2 0.03 Orthogroups_2024-Update
GRMZM2G140915 No alias Cytochrome P450 superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G875732 No alias cytochrome P450, family 71, subfamily A, polypeptide 25 0.02 Orthogroups_2024-Update
Glyma.05G021800 No alias Cytochrome P450 superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G039800 No alias Cytochrome P450 superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G008600 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G195600 No alias cytochrome P450, family 71, subfamily A, polypeptide 26 0.03 Orthogroups_2024-Update
HORVU1Hr1G076710.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.02 Orthogroups_2024-Update
LOC_Os09g26980 No alias cytochrome P450, putative, expressed 0.02 Orthogroups_2024-Update
MA_134595g0010 No alias (at5g07990 : 373.0) Required for flavonoid 3'... 0.04 Orthogroups_2024-Update
MA_24539g0010 No alias (at4g36220 : 351.0) encodes ferulate 5-hydroxylase... 0.06 Orthogroups_2024-Update
MA_353950g0010 No alias "(at3g48280 : 391.0) putative cytochrome P450;... 0.05 Orthogroups_2024-Update
MA_760150g0010 No alias "(q9sbq9|f3ph_pethy : 318.0) Flavonoid 3'-monooxygenase... 0.03 Orthogroups_2024-Update
PSME_00007152-RA No alias (at4g36220 : 369.0) encodes ferulate 5-hydroxylase... 0.04 Orthogroups_2024-Update
PSME_00010797-RA No alias (at5g07990 : 358.0) Required for flavonoid 3'... 0.04 Orthogroups_2024-Update
PSME_00011326-RA No alias (at5g07990 : 377.0) Required for flavonoid 3'... 0.05 Orthogroups_2024-Update
PSME_00013671-RA No alias (o81970|c71a9_soybn : 380.0) Cytochrome P450 71A9 (EC... 0.05 Orthogroups_2024-Update
PSME_00014587-RA No alias (at5g07990 : 380.0) Required for flavonoid 3'... 0.05 Orthogroups_2024-Update
PSME_00020890-RA No alias (at5g07990 : 390.0) Required for flavonoid 3'... 0.04 Orthogroups_2024-Update
PSME_00027625-RA No alias (q9sbq9|f3ph_pethy : 417.0) Flavonoid 3'-monooxygenase... 0.04 Orthogroups_2024-Update
PSME_00046436-RA No alias "(at4g31970 : 309.0) member of CYP82C; ""cytochrome... 0.05 Orthogroups_2024-Update
PSME_00049889-RA No alias (at5g07990 : 365.0) Required for flavonoid 3'... 0.03 Orthogroups_2024-Update
PSME_00053651-RA No alias "(at3g48270 : 382.0) putative cytochrome P450;... 0.07 Orthogroups_2024-Update
PSME_00055503-RA No alias (p37120|c75a2_solme : 489.0) Flavonoid 3',5'-hydroxylase... 0.03 Orthogroups_2024-Update
Pp1s10_359V6 No alias cytochrome p450 0.02 Orthogroups_2024-Update
Pp1s256_30V6 No alias flavonoid 3- 0.02 Orthogroups_2024-Update
Pp1s271_3V6 No alias cytochrome p450 0.03 Orthogroups_2024-Update
Seita.3G298400.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.03 Orthogroups_2024-Update
Seita.5G248700.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.04 Orthogroups_2024-Update
Sobic.009G162500.1 No alias flavonoid 3'-hydroxylase *(F3'H) & EC_1.14... 0.03 Orthogroups_2024-Update
Solyc03g111950 No alias Cytochrome P450 (AHRD V3.3 *** A0A103XWH5_CYNCS) 0.05 Orthogroups_2024-Update
Solyc03g111970 No alias Cytochrome P450 (AHRD V3.3 *-* A0A103XWH5_CYNCS) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA InterProScan predictions
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA InterProScan predictions
MF GO:0020037 heme binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001128 Cyt_P450 48 510
No external refs found!