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Description : (at5g55840 : 523.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 362.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1046.0) & (original description: no original description)
Gene families : OG_42_0122254 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00007182-RA | |
| Cluster | HCCA clusters: Cluster_48 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predicted GO |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 930 | 962 |
| IPR002885 | Pentatricopeptide_repeat | 1035 | 1066 |
| IPR002885 | Pentatricopeptide_repeat | 61 | 91 |
| IPR002885 | Pentatricopeptide_repeat | 1151 | 1176 |
| IPR002885 | Pentatricopeptide_repeat | 373 | 422 |
| IPR002885 | Pentatricopeptide_repeat | 1074 | 1123 |
| IPR002885 | Pentatricopeptide_repeat | 233 | 282 |
| IPR002885 | Pentatricopeptide_repeat | 584 | 632 |
| IPR002885 | Pentatricopeptide_repeat | 306 | 352 |
| IPR002885 | Pentatricopeptide_repeat | 163 | 212 |
| IPR002885 | Pentatricopeptide_repeat | 443 | 492 |
| IPR002885 | Pentatricopeptide_repeat | 653 | 702 |
| IPR002885 | Pentatricopeptide_repeat | 795 | 843 |
| IPR002885 | Pentatricopeptide_repeat | 515 | 559 |
| IPR002885 | Pentatricopeptide_repeat | 1179 | 1227 |
| IPR002885 | Pentatricopeptide_repeat | 864 | 913 |
| IPR002885 | Pentatricopeptide_repeat | 723 | 772 |
| IPR002885 | Pentatricopeptide_repeat | 969 | 1016 |
| IPR002885 | Pentatricopeptide_repeat | 97 | 142 |
| No external refs found! |