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  5. Solyc02g068400

Solyc02g068400


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G20050.5)


Gene families : OG_42_0002920 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002920_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g068400
Cluster HCCA clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
Glyma.19G032600 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
MA_68608g0020 No alias (at4g20050 : 479.0) Encodes a polygalacturonase that... 0.03 Orthogroups_2024-Update
PSME_00007470-RA No alias (at4g20050 : 476.0) Encodes a polygalacturonase that... 0.03 Orthogroups_2024-Update
PSME_00007472-RA No alias (at4g20050 : 479.0) Encodes a polygalacturonase that... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR024535 Pectate_lyase_SF_prot 79 299
No external refs found!