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  5. PSME_00007228-RA

PSME_00007228-RA


Description : (at2g29200 : 852.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 1704.0) & (original description: no original description)


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007228-RA
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Bradi3g55540 No alias pumilio 4 0.03 Orthogroups_2024-Update
Glyma.20G181600 No alias pumilio 4 0.04 Orthogroups_2024-Update
Kfl00880_0010 kfl00880_0010_v1.1 (at2g29200 : 533.0) Encodes a member of the Arabidopsis... 0.02 Orthogroups_2024-Update
MA_23070g0010 No alias (at2g29200 : 676.0) Encodes a member of the Arabidopsis... 0.03 Orthogroups_2024-Update
Pp1s96_93V6 No alias pumilio domain-containing protein ppd1 0.01 Orthogroups_2024-Update
Sobic.009G010300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 951 977
IPR001313 Pumilio_RNA-bd_rpt 808 839
IPR001313 Pumilio_RNA-bd_rpt 1037 1063
IPR001313 Pumilio_RNA-bd_rpt 881 912
IPR001313 Pumilio_RNA-bd_rpt 915 948
IPR001313 Pumilio_RNA-bd_rpt 988 1020
IPR001313 Pumilio_RNA-bd_rpt 771 803
IPR001313 Pumilio_RNA-bd_rpt 843 873
IPR012940 NABP 343 769
No external refs found!