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  5. PSME_00007271-RA

PSME_00007271-RA


Description : (at3g06720 : 573.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (q9slx0|ima1b_orysa : 572.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (reliability: 1146.0) & (original description: no original description)


Gene families : OG_42_0000552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007271-RA

Target Alias Description ECC score Gene Family Method Actions
At5g49310 No alias Importin subunit alpha-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ09] 0.01 Orthogroups_2024-Update
Brara.E03347.1 No alias nucleocytoplasmic transport cargo adaptor protein *(IMP-alpha) 0.02 Orthogroups_2024-Update
Glyma.03G232800 No alias importin alpha isoform 2 0.04 Orthogroups_2024-Update
Glyma.09G039600 No alias importin alpha isoform 2 0.05 Orthogroups_2024-Update
HORVU3Hr1G034750.2 No alias nucleocytoplasmic transport cargo adaptor protein *(IMP-alpha) 0.01 Orthogroups_2024-Update
MA_138621g0010 No alias (at3g06720 : 826.0) Encodes importin alpha involved in... 0.01 Orthogroups_2024-Update
MA_26383g0010 No alias (at3g06720 : 580.0) Encodes importin alpha involved in... 0.01 Orthogroups_2024-Update
MA_92132g0010 No alias (at3g06720 : 842.0) Encodes importin alpha involved in... 0.01 Orthogroups_2024-Update
PSME_00004959-RA No alias (q71vm4|ima1a_orysa : 471.0) Importin alpha-1a subunit -... 0.01 Orthogroups_2024-Update
PSME_00017047-RA No alias (at3g06720 : 431.0) Encodes importin alpha involved in... 0.01 Orthogroups_2024-Update
PSME_00017567-RA No alias (q9slx0|ima1b_orysa : 457.0) Importin alpha-1b subunit -... 0.01 Orthogroups_2024-Update
PSME_00020343-RA No alias (at3g06720 : 536.0) Encodes importin alpha involved in... 0.01 Orthogroups_2024-Update
PSME_00030500-RA No alias (at3g06720 : 485.0) Encodes importin alpha involved in... 0.02 Orthogroups_2024-Update
PSME_00032131-RA No alias (at4g16143 : 367.0) Protein interacts with Agrobacterium... 0.02 Orthogroups_2024-Update
Solyc06g009750 No alias importin alpha 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006606 protein import into nucleus IEA InterProScan predictions
MF GO:0061608 nuclear import signal receptor activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032413 Arm_3 459 502
IPR000225 Armadillo 109 148
IPR000225 Armadillo 319 361
IPR000225 Armadillo 364 402
IPR000225 Armadillo 281 315
IPR000225 Armadillo 152 190
IPR000225 Armadillo 406 444
IPR002652 Importin-a_IBB 12 95
No external refs found!