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  5. PSME_00007345-RA

PSME_00007345-RA


Description : (at3g13772 : 994.0) Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.; transmembrane nine 7 (TMN7); INVOLVED IN: cellular copper ion homeostasis, cellular zinc ion homeostasis; LOCATED IN: integral to membrane, Golgi apparatus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G55130.1); Has 1568 Blast hits to 1544 proteins in 321 species: Archae - 0; Bacteria - 1; Metazoa - 615; Fungi - 232; Plants - 456; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). & (reliability: 1946.0) & (original description: no original description)


Gene families : OG_42_0000405 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000405_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007345-RA
Cluster HCCA clusters: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Bradi1g37590 No alias transmembrane nine 7 0.03 Orthogroups_2024-Update
Bradi4g37690 No alias Endomembrane protein 70 protein family 0.03 Orthogroups_2024-Update
Brara.I04498.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00519_0100 kfl00519_0100_v1.1 (at3g13772 : 894.0) Encodes an Arabidopsis Transmembrane... 0.02 Orthogroups_2024-Update
Pp1s137_209V6 No alias endosomal p24a protein 0.03 Orthogroups_2024-Update
Sopen07g001710 No alias Endomembrane protein 70 0.02 Orthogroups_2024-Update
Sopen07g003100 No alias Endomembrane protein 70 0.02 Orthogroups_2024-Update
Sopen07g029410 No alias Endomembrane protein 70 0.02 Orthogroups_2024-Update
Sopen12g005400 No alias Endomembrane protein 70 0.02 Orthogroups_2024-Update
evm.model.tig00000829.11 No alias (at3g13772 : 781.0) Encodes an Arabidopsis Transmembrane... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR004240 EMP70 53 589
No external refs found!