PSME_00007401-RA

Description : (at5g35530 : 366.0) Ribosomal protein S3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3 family protein (TAIR:AT2G31610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 732.0) & (original description: no original description)

Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00007401-RA
Cluster	HCCA clusters: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
438700	No alias	Ribosomal protein S3 family protein	0.03	Orthogroups_2024-Update
A4A49_00336	No alias	40s ribosomal protein s3-3	0.07	Orthogroups_2024-Update
Bradi3g16150	No alias	Ribosomal protein S3 family protein	0.1	Orthogroups_2024-Update
Brara.C01612.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.C01619.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Brara.D01897.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Brara.D01899.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Cre02.g102250	No alias	Ribosomal protein S3 family protein	0.05	Orthogroups_2024-Update
GRMZM2G074300	No alias	Ribosomal protein S3 family protein	0.05	Orthogroups_2024-Update
Glyma.09G156600	No alias	Ribosomal protein S3 family protein	0.03	Orthogroups_2024-Update
Glyma.10G133100	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
Glyma.16G207400	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
Glyma.20G083300	No alias	Ribosomal protein S3 family protein	0.05	Orthogroups_2024-Update
Kfl00057_0410	kfl00057_0410_v1.1	(at5g35530 : 390.0) Ribosomal protein S3 family protein;...	0.03	Orthogroups_2024-Update
MA_10436283g0010	No alias	(at5g35530 : 397.0) Ribosomal protein S3 family protein;...	0.07	Orthogroups_2024-Update
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.09	Orthogroups_2024-Update
Potri.006G222100	No alias	Ribosomal protein S3 family protein	0.07	Orthogroups_2024-Update
Potri.018G049100	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
Pp1s127_74V6	No alias	40s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s29_222V6	No alias	40s ribosomal protein	0.11	Orthogroups_2024-Update
Pp1s31_178V6	No alias	40s ribosomal protein	0.08	Orthogroups_2024-Update
Pp1s41_146V6	No alias	40s ribosomal protein	0.07	Orthogroups_2024-Update
Pp1s454_3V6	No alias	40s ribosomal protein	0.11	Orthogroups_2024-Update
Seita.2G385700.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Seita.6G050300.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.002G371100.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.007G053300.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Solyc07g041310	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.12	Orthogroups_2024-Update
Solyc08g061850	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.08	Orthogroups_2024-Update
Solyc08g061960	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.1	Orthogroups_2024-Update
Sopen07g020630	No alias	Ribosomal protein S3, C-terminal domain	0.18	Orthogroups_2024-Update
Sopen08g017410	No alias	Ribosomal protein S3, C-terminal domain	0.05	Orthogroups_2024-Update
Sopen08g017480	No alias	Ribosomal protein S3, C-terminal domain	0.1	Orthogroups_2024-Update
evm.model.contig_2149.7	No alias	(at5g35530 : 302.0) Ribosomal protein S3 family protein;...	0.16	Orthogroups_2024-Update
evm.model.tig00021462.41	No alias	(at2g31610 : 358.0) Ribosomal protein S3 family protein;...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005740	mitochondrial envelope	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005787	signal peptidase complex	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006465	signal peptide processing	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Predicted GO
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Predicted GO
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031967	organelle envelope	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0031975	envelope	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	61	134
IPR001351	Ribosomal_S3_C	147	224

External Links

No external refs found!

PSME_00007401-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation