PSME_00007424-RA


Description : (at5g14420 : 142.0) RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)


Gene families : OG_42_0000469 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007424-RA
Cluster HCCA clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
Bradi2g58190 No alias RING domain ligase2 0.02 Orthogroups_2024-Update
Brara.B03874.1 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.03 Orthogroups_2024-Update
Glyma.08G001466 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.02 Orthogroups_2024-Update
LOC_Os06g40650 No alias copine-1, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005024-RA No alias (at1g67800 : 322.0) Copine (Calcium-dependent... 0.01 Orthogroups_2024-Update
PSME_00021102-RA No alias (at3g01650 : 226.0) RING domain ligase1 (RGLG1);... 0.04 Orthogroups_2024-Update
Seita.5G421700.1 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.04 Orthogroups_2024-Update
Sobic.007G220100.1 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR010734 Copine 67 157
No external refs found!