Description : (at4g20050 : 479.0) Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.; QUARTET 3 (QRT3); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20040.1); Has 103 Blast hits to 103 proteins in 26 species: Archae - 2; Bacteria - 18; Metazoa - 0; Fungi - 3; Plants - 67; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 958.0) & (original description: no original description)
Gene families : OG_42_0002920 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002920_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00007472-RA | |
Cluster | HCCA clusters: Cluster_81 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.K01790.1 | No alias | polygalacturonase *(QRT3) | 0.04 | Orthogroups_2024-Update | |
Glyma.19G032600 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.003G075300 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Solyc02g068400 | No alias | Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G20050.5) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001871 | pattern binding | IEP | Predicted GO |
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0004857 | enzyme inhibitor activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
MF | GO:0005509 | calcium ion binding | IEP | Predicted GO |
MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
BP | GO:0006449 | regulation of translational termination | IEP | Predicted GO |
BP | GO:0006452 | translational frameshifting | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006810 | transport | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
MF | GO:0008171 | O-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008272 | sulfate transport | IEP | Predicted GO |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0030234 | enzyme regulator activity | IEP | Predicted GO |
MF | GO:0030247 | polysaccharide binding | IEP | Predicted GO |
MF | GO:0030599 | pectinesterase activity | IEP | Predicted GO |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0042545 | cell wall modification | IEP | Predicted GO |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Predicted GO |
BP | GO:0043244 | regulation of protein complex disassembly | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0045229 | external encapsulating structure organization | IEP | Predicted GO |
BP | GO:0045727 | positive regulation of translation | IEP | Predicted GO |
BP | GO:0045901 | positive regulation of translational elongation | IEP | Predicted GO |
BP | GO:0045905 | positive regulation of translational termination | IEP | Predicted GO |
BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051179 | localization | IEP | Predicted GO |
BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predicted GO |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | Predicted GO |
BP | GO:0071555 | cell wall organization | IEP | Predicted GO |
BP | GO:0072348 | sulfur compound transport | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |