PSME_00007759-RA


Description : (at3g12770 : 656.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 101.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1312.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007759-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
27025 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
412514 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
At4g31070 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.05 Orthogroups_2024-Update
Bradi1g01280 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g58370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g25480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g50550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g41840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Brara.C02940.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.01G011700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G112100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G043480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_100287g0010 No alias (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
MA_10157572g0010 No alias (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_10426444g0010 No alias (at4g13650 : 697.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_10430355g0010 No alias (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_10431227g0020 No alias (at3g57430 : 629.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_12023g0010 No alias (at4g02750 : 731.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_123466g0010 No alias (at3g57430 : 553.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_13022g0010 No alias (at2g13600 : 530.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_138676g0010 No alias (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... 0.07 Orthogroups_2024-Update
MA_139163g0010 No alias (at4g13650 : 549.0) Pentatricopeptide repeat (PPR)... 0.11 Orthogroups_2024-Update
MA_14381g0010 No alias (at3g12770 : 611.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
MA_14938g0010 No alias (at2g22070 : 608.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
MA_440697g0010 No alias (at4g18750 : 611.0) Encodes a pentatricopeptide (PPR)... 0.07 Orthogroups_2024-Update
MA_4438g0010 No alias (at1g11290 : 719.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_501007g0010 No alias (at4g13650 : 662.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_61422g0020 No alias (at4g13650 : 721.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
MA_681272g0010 No alias (at3g46790 : 439.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
MA_778985g0010 No alias (at2g27610 : 621.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_9384g0020 No alias (at3g49170 : 527.0) embryo defective 2261 (EMB2261);... 0.06 Orthogroups_2024-Update
MA_944980g0010 No alias (at3g12770 : 548.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
MA_98224g0010 No alias (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G205600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g092150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g052200 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g016890 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.07 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g024970 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 263
IPR002885 Pentatricopeptide_repeat 519 543
IPR002885 Pentatricopeptide_repeat 207 229
IPR032867 DYW_dom 617 740
IPR002885 Pentatricopeptide_repeat 443 491
IPR002885 Pentatricopeptide_repeat 343 390
IPR002885 Pentatricopeptide_repeat 131 178
No external refs found!