1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00007782-RA

PSME_00007782-RA


Description : (at2g17260 : 247.0) Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.; glutamate receptor 2 (GLR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, stomatal movement; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2 (TAIR:AT4G35290.1); Has 6275 Blast hits to 6137 proteins in 506 species: Archae - 28; Bacteria - 848; Metazoa - 4591; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink). & (q7xp59|glr31_orysa : 215.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 494.0) & (original description: no original description)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007782-RA
Cluster HCCA clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
A4A49_23302 No alias glutamate receptor 3.1 0.03 Orthogroups_2024-Update
A4A49_28967 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Bradi1g31350 No alias glutamate receptor 2.2 0.03 Orthogroups_2024-Update
Bradi1g46947 No alias glutamate receptor 2.5 0.05 Orthogroups_2024-Update
Bradi4g30850 No alias glutamate receptor 2.7 0.06 Orthogroups_2024-Update
Bradi4g30880 No alias glutamate receptor 2.7 0.07 Orthogroups_2024-Update
Brara.C01649.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Brara.D01954.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU2Hr1G064530.8 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
HORVU6Hr1G083570.16 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083680.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU7Hr1G031430.5 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os06g06130 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g08900 No alias glutamate receptor 2.6 precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10140272g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_11333g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
MA_46902g0010 No alias (at1g05200 : 769.0) member of Putative ligand-gated ion... 0.06 Orthogroups_2024-Update
PSME_00001097-RA No alias (at2g29120 : 619.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
PSME_00001098-RA No alias (at2g29120 : 637.0) member of Putative ligand-gated ion... 0.06 Orthogroups_2024-Update
PSME_00001291-RA No alias (at4g35290 : 534.0) Encodes a putative glutamate... 0.07 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.06 Orthogroups_2024-Update
PSME_00009648-RA No alias (at4g35290 : 566.0) Encodes a putative glutamate... 0.05 Orthogroups_2024-Update
PSME_00009649-RA No alias (at4g35290 : 475.0) Encodes a putative glutamate... 0.05 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.1 Orthogroups_2024-Update
PSME_00021964-RA No alias (at1g05200 : 282.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00023170-RA No alias (at1g42540 : 830.0) member of Putative ligand-gated ion... 0.07 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.07 Orthogroups_2024-Update
PSME_00032127-RA No alias (at4g35290 : 436.0) Encodes a putative glutamate... 0.07 Orthogroups_2024-Update
PSME_00033212-RA No alias (at1g42540 : 242.0) member of Putative ligand-gated ion... 0.11 Orthogroups_2024-Update
PSME_00035957-RA No alias (at1g05200 : 207.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00037073-RA No alias (at2g17260 : 246.0) Encodes a glutamate receptor.... 0.04 Orthogroups_2024-Update
PSME_00040281-RA No alias (at2g29120 : 550.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
Potri.001G374300 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.006G172100 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
Potri.006G172900 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Potri.011G062750 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.011G062900 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Potri.014G028500 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Potri.014G028800 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.018G010400 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.018G012000 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Potri.018G012100 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Potri.018G013000 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.018G096500 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Potri.019G091800 No alias glutamate receptor 2.2 0.02 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Seita.2G212500.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Seita.2G212600.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G208700.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Sobic.002G209100.1 No alias ligand-gated cation channel *(GLR) 0.07 Orthogroups_2024-Update
Sobic.010G068600.1 No alias ligand-gated cation channel *(GLR) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004970 ionotropic glutamate receptor activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 386 415
IPR001638 Solute-binding_3/MltF_N 65 385
No external refs found!