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  5. PSME_00007990-RA

PSME_00007990-RA


Description : (at3g22840 : 162.0) Encodes an early light-inducible protein.; EARLY LIGHT-INDUCABLE PROTEIN (ELIP1); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G14690.1); Has 319 Blast hits to 319 proteins in 50 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). & (p11432|eli_pea : 160.0) Early light-induced protein, chloroplast precursor (ELIP) - Pisum sativum (Garden pea) & (reliability: 324.0) & (original description: no original description)


Gene families : OG_42_0000421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00007990-RA
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
At3g22840 No alias ELIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VCA8] 0.03 Orthogroups_2024-Update
Cre09.g394325 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G067070.3 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
Kfl00052_0260 kfl00052_0260_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Kfl00110_0040 kfl00110_0040_v1.1 (at3g22840 : 99.4) Encodes an early light-inducible... 0.01 Orthogroups_2024-Update
Pp1s15_459V6 No alias elip1.1.1 gene for putative early light-induced protein ELIP1.1.1 0.03 Orthogroups_2024-Update
Seita.2G053300.1 No alias LHC-related protein *(ELIP) 0.04 Orthogroups_2024-Update
Seita.2G053700.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
Seita.2G053800.1 No alias LHC-related protein *(ELIP) 0.03 Orthogroups_2024-Update
Sobic.002G052000.2 No alias LHC-related protein *(ELIP) 0.02 Orthogroups_2024-Update
Sopen09g031560 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 93 138
No external refs found!