PSME_00008166-RA

Description : (at1g05910 : 838.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 212.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1676.0) & (original description: no original description)

Gene families : OG_42_0005707 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005707_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00008166-RA
Cluster	HCCA clusters: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
170139	No alias	cell division cycle protein 48-related / CDC48-related	0.02	Orthogroups_2024-Update
Bradi4g35150	No alias	cell division cycle protein 48-related / CDC48-related	0.02	Orthogroups_2024-Update
MA_10432357g0010	No alias	(at1g05910 : 1177.0) cell division cycle protein...	0.04	Orthogroups_2024-Update
Pp1s82_108V6	No alias	bromodomain protein	0.03	Orthogroups_2024-Update
evm.model.contig_3497.3	No alias	(at1g05910 : 434.0) cell division cycle protein...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005096	GTPase activator activity	IEP	Predicted GO
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006476	protein deacetylation	IEP	Predicted GO
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
BP	GO:0016575	histone deacetylation	IEP	Predicted GO
MF	GO:0030695	GTPase regulator activity	IEP	Predicted GO
BP	GO:0035601	protein deacylation	IEP	Predicted GO
BP	GO:0098732	macromolecule deacylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	453	587

External Links

No external refs found!

PSME_00008166-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation