Description : (at5g02310 : 427.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 854.0) & (original description: no original description)
Gene families : OG_42_0002846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002846_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00008233-RA | |
Cluster | HCCA clusters: Cluster_86 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g02310 | No alias | E3 ubiquitin-protein ligase PRT6... | 0.03 | Orthogroups_2024-Update | |
Glyma.07G132300 | No alias | proteolysis 6 | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G013300.5 | No alias | type-I-residues E3 ubiquitin ligase *(PRT6) | 0.06 | Orthogroups_2024-Update | |
Kfl00338_0040 | kfl00338_0040_v1.1 | (at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a... | 0.02 | Orthogroups_2024-Update | |
Pp1s356_43V6 | No alias | ubiquitin ligase e3 | 0.03 | Orthogroups_2024-Update | |
Seita.5G102700.1 | No alias | type-I-residues E3 ubiquitin ligase *(PRT6) | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_3503.1 | No alias | (at5g02310 : 104.0) Encodes PROTEOLYSIS6 (PRT6), a... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Predicted GO |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006476 | protein deacetylation | IEP | Predicted GO |
BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
BP | GO:0009314 | response to radiation | IEP | Predicted GO |
BP | GO:0009416 | response to light stimulus | IEP | Predicted GO |
BP | GO:0009581 | detection of external stimulus | IEP | Predicted GO |
BP | GO:0009582 | detection of abiotic stimulus | IEP | Predicted GO |
BP | GO:0009583 | detection of light stimulus | IEP | Predicted GO |
BP | GO:0009584 | detection of visible light | IEP | Predicted GO |
BP | GO:0009605 | response to external stimulus | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
BP | GO:0016575 | histone deacetylation | IEP | Predicted GO |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0018298 | protein-chromophore linkage | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0035601 | protein deacylation | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0051606 | detection of stimulus | IEP | Predicted GO |
CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
BP | GO:0098732 | macromolecule deacylation | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003126 | Znf_UBR | 92 | 158 |
No external refs found! |