1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00008269-RA

PSME_00008269-RA


Description : (at4g20990 : 172.0) alpha carbonic anhydrase 4 (ACA4); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 6 (TAIR:AT4G21000.1); Has 3359 Blast hits to 3345 proteins in 546 species: Archae - 0; Bacteria - 694; Metazoa - 2070; Fungi - 83; Plants - 327; Viruses - 4; Other Eukaryotes - 181 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)


Gene families : OG_42_0000267 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008269-RA
Cluster HCCA clusters: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
A4A49_02271 No alias alpha carbonic anhydrase 1, chloroplastic 0.03 Orthogroups_2024-Update
At1g08080 No alias Alpha carbonic anhydrase 7... 0.03 Orthogroups_2024-Update
GRMZM2G087259 No alias alpha carbonic anhydrase 7 0.03 Orthogroups_2024-Update
GRMZM5G807267 No alias alpha carbonic anhydrase 1 0.05 Orthogroups_2024-Update
Glyma.10G059400 No alias alpha carbonic anhydrase 7 0.06 Orthogroups_2024-Update
Mp6g14480.1 No alias Alpha carbonic anhydrase 7 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp8g11360.1 No alias Alpha carbonic anhydrase 1, chloroplastic OS=Arabidopsis... 0.05 Orthogroups_2024-Update
PSME_00007376-RA No alias (at1g08080 : 286.0) alpha carbonic anhydrase 7 (ACA7);... 0.05 Orthogroups_2024-Update
Seita.6G179900.1 No alias alpha-type carbonic anhydrase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001148 CA_dom 27 97
IPR001148 CA_dom 115 239
No external refs found!