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  5. PSME_00008280-RA

PSME_00008280-RA


Description : (at1g02800 : 594.0) Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.; cellulase 2 (CEL2); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2; Bacteria - 651; Metazoa - 181; Fungi - 17; Plants - 925; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). & (q8lq92|gun3_orysa : 587.0) Endoglucanase 3 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 3) (OsGLU8) - Oryza sativa (Rice) & (reliability: 1188.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008280-RA
Cluster HCCA clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
99802 No alias glycosyl hydrolase 9C2 0.03 Orthogroups_2024-Update
A4A49_18847 No alias endoglucanase 6 0.04 Orthogroups_2024-Update
At1g23210 No alias Endoglucanase 4 [Source:UniProtKB/Swiss-Prot;Acc:O49296] 0.03 Orthogroups_2024-Update
At4g09740 No alias Endoglucanase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ90] 0.02 Orthogroups_2024-Update
Brara.G01131.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G343144 No alias glycosyl hydrolase 9C1 0.03 Orthogroups_2024-Update
Glyma.11G101300 No alias glycosyl hydrolase 9C1 0.03 Orthogroups_2024-Update
HORVU1Hr1G079980.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
LOC_Os01g12030 No alias endoglucanase precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g50040 No alias endoglucanase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g13830 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
MA_697188g0010 No alias (at4g02290 : 427.0) glycosyl hydrolase 9B13 (GH9B13);... 0.04 Orthogroups_2024-Update
PSME_00016573-RA No alias (at3g43860 : 521.0) glycosyl hydrolase 9A4 (GH9A4);... 0.03 Orthogroups_2024-Update
PSME_00029529-RA No alias (at1g64390 : 682.0) glycosyl hydrolase 9C2 (GH9C2);... 0.04 Orthogroups_2024-Update
Potri.001G092200 No alias glycosyl hydrolase 9C2 0.04 Orthogroups_2024-Update
Potri.002G225200 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
Potri.003G147600 No alias cellulase 2 0.03 Orthogroups_2024-Update
Potri.005G115400 No alias glycosyl hydrolase 9B5 0.03 Orthogroups_2024-Update
Potri.014G157600 No alias glycosyl hydrolase 9B8 0.04 Orthogroups_2024-Update
Pp1s100_137V6 No alias endo- -beta- 0.03 Orthogroups_2024-Update
Seita.2G287600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G108700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G273500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G017300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G101900.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc09g010210 No alias endo-1,4-beta-glucanase precursor (Cel2) 0.03 Orthogroups_2024-Update
Sopen04g034920 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update
Sopen09g004950 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 48 475
No external refs found!