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  5. PSME_00008851-RA

PSME_00008851-RA


Description : (at1g64390 : 781.0) glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (q5nat0|gun2_orysa : 703.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 1562.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008851-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
85183 No alias glycosyl hydrolase 9A4 0.02 Orthogroups_2024-Update
A4A49_19880 No alias endoglucanase 8 0.03 Orthogroups_2024-Update
At1g70710 No alias Endoglucanase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAC1] 0.03 Orthogroups_2024-Update
Brara.B01966.1 No alias class-B endo-1,4-beta-glucanase 0.04 Orthogroups_2024-Update
Brara.G03367.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03254.1 No alias class-B endo-1,4-beta-glucanase 0.04 Orthogroups_2024-Update
Cre17.g730600 No alias glycosyl hydrolase 9C3 0.02 Orthogroups_2024-Update
Glyma.02G269400 No alias glycosyl hydrolase 9B8 0.03 Orthogroups_2024-Update
LOC_Os05g03840 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
MA_216572g0010 No alias (at1g02800 : 571.0) Encodes a protein with similarity to... 0.05 Orthogroups_2024-Update
MA_42717g0010 No alias (at4g11050 : 801.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
Potri.002G023900 No alias glycosyl hydrolase 9B5 0.06 Orthogroups_2024-Update
Potri.003G147600 No alias cellulase 2 0.02 Orthogroups_2024-Update
Potri.009G123900 No alias glycosyl hydrolase 9B18 0.03 Orthogroups_2024-Update
Pp1s149_10V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s176_127V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Seita.1G339700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G287600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g083210 No alias endo-1,4-beta-glucanase (cel5) 0.04 Orthogroups_2024-Update
Sopen04g034920 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update
Sopen11g018340 No alias Glycosyl hydrolase family 9 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
MF GO:0030246 carbohydrate binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR019028 CBM_49 551 628
IPR001701 Glyco_hydro_9 47 506
No external refs found!