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  5. PSME_00008883-RA

PSME_00008883-RA


Description : (at2g22800 : 108.0) Encodes homeobox protein HAT9.; HAT9; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT4G37790.1); Has 6755 Blast hits to 6732 proteins in 464 species: Archae - 0; Bacteria - 0; Metazoa - 4333; Fungi - 266; Plants - 2037; Viruses - 7; Other Eukaryotes - 112 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)


Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008883-RA
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Brara.A01857.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.03G114300 No alias homeobox-leucine zipper protein 3 0.03 Orthogroups_2024-Update
MA_60457g0010 No alias (at5g06710 : 208.0) Homeobox-leucine zipper protein.;... 0.03 Orthogroups_2024-Update
PSME_00016008-RA No alias (at4g37790 : 135.0) Encodes homeobox protein HAT22,... 0.03 Orthogroups_2024-Update
PSME_00018809-RA No alias (at5g06710 : 140.0) Homeobox-leucine zipper protein.;... 0.05 Orthogroups_2024-Update
PSME_00049755-RA No alias (at5g06710 : 157.0) Homeobox-leucine zipper protein.;... 0.04 Orthogroups_2024-Update
Potri.006G193700 No alias homeobox from Arabidopsis thaliana 0.02 Orthogroups_2024-Update
Sobic.004G185200.1 No alias HD-ZIP I/II-type transcription factor 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 174 228
IPR006712 HD-ZIP_N 11 139
No external refs found!