PSME_00008960-RA

Description : (at2g26640 : 707.0) Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; 3-ketoacyl-CoA synthase 11 (KCS11); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 2 (TAIR:AT1G04220.1); Has 3664 Blast hits to 3650 proteins in 908 species: Archae - 0; Bacteria - 1588; Metazoa - 0; Fungi - 2; Plants - 1914; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). & (reliability: 1414.0) & (original description: no original description)

Gene families : OG_42_0000099 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000099_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00008960-RA
Cluster	HCCA clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
231244	No alias	3-ketoacyl-CoA synthase 4	0.05	Orthogroups_2024-Update
79947	No alias	3-ketoacyl-CoA synthase 4	0.05	Orthogroups_2024-Update
A4A49_08035	No alias	3-ketoacyl-coa synthase 20	0.02	Orthogroups_2024-Update
A4A49_31667	No alias	3-ketoacyl-coa synthase 11	0.02	Orthogroups_2024-Update
A4A49_37182	No alias	3-ketoacyl-coa synthase 20	0.03	Orthogroups_2024-Update
At1g04220	No alias	3-ketoacyl-CoA synthase 2...	0.03	Orthogroups_2024-Update
At4g34520	No alias	3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UUK5]	0.03	Orthogroups_2024-Update
Bradi1g30740	No alias	3-ketoacyl-CoA synthase 6	0.03	Orthogroups_2024-Update
Bradi1g68430	No alias	3-ketoacyl-CoA synthase 1	0.03	Orthogroups_2024-Update
Bradi1g69637	No alias	3-ketoacyl-CoA synthase 6	0.04	Orthogroups_2024-Update
Bradi2g16050	No alias	3-ketoacyl-CoA synthase 4	0.02	Orthogroups_2024-Update
Bradi3g20850	No alias	3-ketoacyl-CoA synthase 1	0.02	Orthogroups_2024-Update
Brara.B00145.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.04	Orthogroups_2024-Update
Brara.C04403.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.03	Orthogroups_2024-Update
Brara.I04402.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.03	Orthogroups_2024-Update
GRMZM2G031790	No alias	3-ketoacyl-CoA synthase 2	0.02	Orthogroups_2024-Update
GRMZM2G164974	No alias	3-ketoacyl-CoA synthase 6	0.03	Orthogroups_2024-Update
GRMZM2G409312	No alias	3-ketoacyl-CoA synthase 6	0.03	Orthogroups_2024-Update
Glyma.03G260300	No alias	3-ketoacyl-CoA synthase 1	0.03	Orthogroups_2024-Update
Glyma.04G057800	No alias	3-ketoacyl-CoA synthase 10	0.03	Orthogroups_2024-Update
Glyma.06G058500	No alias	3-ketoacyl-CoA synthase 10	0.04	Orthogroups_2024-Update
Glyma.08G261100	No alias	3-ketoacyl-CoA synthase 6	0.05	Orthogroups_2024-Update
Glyma.10G001800	No alias	3-ketoacyl-CoA synthase 11	0.02	Orthogroups_2024-Update
Glyma.10G179400	No alias	3-ketoacyl-CoA synthase 11	0.06	Orthogroups_2024-Update
Glyma.20G210900	No alias	3-ketoacyl-CoA synthase 11	0.05	Orthogroups_2024-Update
HORVU4Hr1G063420.2	No alias	3-ketoacyl-CoA synthase *(KCS)	0.04	Orthogroups_2024-Update
HORVU4Hr1G067340.2	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
HORVU7Hr1G006910.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
LOC_Os03g08360	No alias	3-ketoacyl-CoA synthase 10, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g12030	No alias	3-ketoacyl-CoA synthase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g49900	No alias	3-ketoacyl-CoA synthase, putative, expressed	0.02	Orthogroups_2024-Update
MA_105806g0010	No alias	(at2g26640 : 701.0) Encodes KCS11, a member of the...	0.08	Orthogroups_2024-Update
MA_10605g0020	No alias	(at1g68530 : 749.0) Encodes KCS6, a member of the...	0.09	Orthogroups_2024-Update
MA_759169g0010	No alias	(at2g26250 : 620.0) epidermis-specific, encodes KCS10, a...	0.06	Orthogroups_2024-Update
PSME_00037485-RA	No alias	(at2g26250 : 756.0) epidermis-specific, encodes KCS10, a...	0.04	Orthogroups_2024-Update
Potri.001G211400	No alias	3-ketoacyl-CoA synthase 7	0.03	Orthogroups_2024-Update
Potri.002G178000	No alias	3-ketoacyl-CoA synthase 1	0.07	Orthogroups_2024-Update
Potri.006G218000	No alias	3-ketoacyl-CoA synthase 10	0.05	Orthogroups_2024-Update
Potri.010G125300	No alias	3-ketoacyl-CoA synthase 6	0.04	Orthogroups_2024-Update
Potri.013G119600	No alias	3-ketoacyl-CoA synthase 19	0.03	Orthogroups_2024-Update
Potri.014G104300	No alias	3-ketoacyl-CoA synthase 1	0.05	Orthogroups_2024-Update
Pp1s118_54V6	No alias	beta-ketoacyl-coa synthase family protein	0.04	Orthogroups_2024-Update
Pp1s268_29V6	No alias	beta-ketoacyl-coa synthase family protein	0.02	Orthogroups_2024-Update
Pp1s30_335V6	No alias	beta-ketoacyl-coa synthase family protein	0.03	Orthogroups_2024-Update
Pp1s35_53V6	No alias	beta-ketoacyl-coa synthase family protein	0.03	Orthogroups_2024-Update
Pp1s8_88V6	No alias	beta-ketoacyl- synthase	0.07	Orthogroups_2024-Update
Seita.1G042400.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
Seita.2G184500.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.03	Orthogroups_2024-Update
Seita.9G285300.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.03	Orthogroups_2024-Update
Sobic.001G264500.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
Sobic.001G453200.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.04	Orthogroups_2024-Update
Sobic.001G495500.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
Sobic.005G168700.1	No alias	3-ketoacyl-CoA synthase *(KCS)	0.02	Orthogroups_2024-Update
Solyc08g067260	No alias	3-ketoacyl-CoA synthase (AHRD V3.3 *** A0A0V0IHH6_SOLCH)	0.04	Orthogroups_2024-Update
Solyc09g083050	No alias	3-ketoacyl-CoA synthase (AHRD V3.3 *** M1A6B6_SOLTU)	0.04	Orthogroups_2024-Update
Sopen03g021100	No alias	FAE1/Type III polyketide synthase-like protein	0.03	Orthogroups_2024-Update
Sopen10g005030	No alias	FAE1/Type III polyketide synthase-like protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	transferase activity, transferring acyl groups	None	Extended
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEA	InterProScan predictions
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013747	ACP_syn_III_C	420	500
IPR013601	FAE1_typ3_polyketide_synth	113	402

External Links

No external refs found!

PSME_00008960-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation