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  5. PSME_00008974-RA

PSME_00008974-RA


Description : (at4g21820 : 395.0) binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink). & (reliability: 790.0) & (original description: no original description)


Gene families : OG_42_0005597 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00008974-RA
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Sobic.002G319300.3 No alias regulatory protein *(ASPM) of microtubule minus-end stability 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 788 807
IPR000048 IQ_motif_EF-hand-BS 832 850
IPR000048 IQ_motif_EF-hand-BS 969 988
IPR000048 IQ_motif_EF-hand-BS 878 897
IPR000048 IQ_motif_EF-hand-BS 725 744
IPR000048 IQ_motif_EF-hand-BS 1037 1052
IPR000048 IQ_motif_EF-hand-BS 856 873
IPR000048 IQ_motif_EF-hand-BS 924 943
IPR000048 IQ_motif_EF-hand-BS 900 917
IPR001715 CH-domain 453 544
No external refs found!