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  5. PSME_00009069-RA

PSME_00009069-RA


Description : (at2g36830 : 317.0) Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.; gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink). & (p50156|tip11_orysa : 302.0) Probable aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1) (OsTIP1.1) (rTIP1) - Oryza sativa (Rice) & (reliability: 634.0) & (original description: no original description)


Gene families : OG_42_0000183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009069-RA
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
At1g52180 No alias Aquaporin, putative [Source:UniProtKB/TrEMBL;Acc:Q9M818] 0.03 Orthogroups_2024-Update
Bradi2g62520 No alias tonoplast intrinsic protein 1;3 0.03 Orthogroups_2024-Update
Brara.C03603.1 No alias tonoplast intrinsic protein *(TIP) 0.02 Orthogroups_2024-Update
Brara.K01131.1 No alias tonoplast intrinsic protein *(TIP) 0.02 Orthogroups_2024-Update
Glyma.18G286700 No alias tonoplast intrinsic protein 1;3 0.02 Orthogroups_2024-Update
MA_467865g0010 No alias (at3g16240 : 316.0) Delta tonoplast intrinsic protein,... 0.04 Orthogroups_2024-Update
Mp1g04190.1 No alias tonoplast intrinsic protein (TIP) 0.02 Orthogroups_2024-Update
PSME_00033210-RA No alias (at3g16240 : 295.0) Delta tonoplast intrinsic protein,... 0.03 Orthogroups_2024-Update
Potri.008G050700 No alias tonoplast intrinsic protein 1;3 0.02 Orthogroups_2024-Update
Seita.5G007500.1 No alias tonoplast intrinsic protein *(TIP) 0.02 Orthogroups_2024-Update
Sopen08g020810 No alias Major intrinsic protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000425 MIP 36 256
No external refs found!