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  5. PSME_00009409-RA

PSME_00009409-RA


Description : (at3g22220 : 94.4) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description)


Gene families : OG_42_0002139 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002139_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009409-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
PSME_00009569-RA No alias (at3g17450 : 98.2) hAT dimerisation domain-containing... 0.06 Orthogroups_2024-Update
PSME_00011784-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00015761-RA No alias (at3g17450 : 129.0) hAT dimerisation domain-containing... 0.02 Orthogroups_2024-Update
PSME_00021867-RA No alias (at3g17450 : 91.7) hAT dimerisation domain-containing... 0.02 Orthogroups_2024-Update
PSME_00032769-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00050555-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00054369-RA No alias (at3g17450 : 92.0) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 4 38
No external refs found!