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  5. PSME_00009505-RA

PSME_00009505-RA


Description : (at4g12420 : 642.0) Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.; SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1). & (q00624|aso_brana : 400.0) L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase) - Brassica napus (Rape) & (reliability: 1194.0) & (original description: no original description)


Gene families : OG_42_0001738 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001738_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009505-RA
Cluster HCCA clusters: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
PSME_00032199-RA No alias (at4g12420 : 542.0) Encodes a protein of unknown... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016887 ATPase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 130 282
IPR011707 Cu-oxidase_3 32 116
IPR011706 Cu-oxidase_2 353 482
No external refs found!