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  5. PSME_00009527-RA

PSME_00009527-RA


Description : (at1g16480 : 414.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1). & (q76c99|rf1_orysa : 82.4) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 828.0) & (original description: no original description)


Gene families : OG_42_0022476 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009527-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
MA_8499g0030 No alias (at1g16480 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 615 659
IPR002885 Pentatricopeptide_repeat 207 255
IPR002885 Pentatricopeptide_repeat 410 458
IPR002885 Pentatricopeptide_repeat 512 559
IPR002885 Pentatricopeptide_repeat 311 336
IPR002885 Pentatricopeptide_repeat 108 132
IPR002885 Pentatricopeptide_repeat 587 612
IPR002885 Pentatricopeptide_repeat 80 105
IPR002885 Pentatricopeptide_repeat 688 711
IPR002885 Pentatricopeptide_repeat 283 308
No external refs found!