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  5. PSME_00009538-RA

PSME_00009538-RA


Description : (at2g41740 : 416.0) Encodes a protein with high homology to animal villin.; villin 2 (VLN2); FUNCTIONS IN: actin binding, protein binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 3 (TAIR:AT3G57410.1); Has 3753 Blast hits to 2353 proteins in 268 species: Archae - 0; Bacteria - 52; Metazoa - 2426; Fungi - 285; Plants - 242; Viruses - 2; Other Eukaryotes - 746 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)


Gene families : OG_42_0000618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000618_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009538-RA
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Bradi2g35467 No alias villin-like 1 0.03 Orthogroups_2024-Update
Brara.E00239.1 No alias villin actin-crosslinking factor 0.02 Orthogroups_2024-Update
PSME_00011329-RA No alias (at2g41740 : 374.0) Encodes a protein with high homology... 0.05 Orthogroups_2024-Update
PSME_00029798-RA No alias (at2g41740 : 395.0) Encodes a protein with high homology... 0.06 Orthogroups_2024-Update
PSME_00031262-RA No alias (at2g41740 : 202.0) Encodes a protein with high homology... 0.05 Orthogroups_2024-Update
Sobic.003G427600.1 No alias villin actin-crosslinking factor 0.02 Orthogroups_2024-Update
Solyc10g080100 No alias villin 2 (AHRD V3.3 *** AT2G41740.2) 0.02 Orthogroups_2024-Update
Sopen02g005870 No alias Gelsolin repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 71 119
IPR007123 Gelsolin-like_dom 265 331
No external refs found!