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  5. PSME_00009543-RA

PSME_00009543-RA


Description : (at1g22280 : 249.0) Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.; phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). & (reliability: 498.0) & (original description: no original description)


Gene families : OG_42_0000194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009543-RA

Target Alias Description ECC score Gene Family Method Actions
227813 No alias Protein phosphatase 2C family protein 0.01 Orthogroups_2024-Update
230443 No alias PP2C induced by AVRRPM1 0.02 Orthogroups_2024-Update
At2g20630 No alias Probable protein phosphatase 2C 20... 0.02 Orthogroups_2024-Update
At4g31750 No alias WIN2 [Source:UniProtKB/TrEMBL;Acc:A0A178UT68] 0.03 Orthogroups_2024-Update
At5g53140 No alias Probable protein phosphatase 2C 76... 0.02 Orthogroups_2024-Update
GRMZM2G040642 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
GRMZM2G166035 No alias HOPW1-1-interacting 2 0.01 Orthogroups_2024-Update
GRMZM2G412937 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
LOC_Os04g56450 No alias protein phosphatase 2C, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os07g32380 No alias protein phosphatase 2C, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00045342-RA No alias (at1g22280 : 144.0) Encodes a phytochrome-associated... 0.01 Orthogroups_2024-Update
Potri.011G116700 No alias Protein phosphatase 2C family protein 0.01 Orthogroups_2024-Update
Seita.6G023300.1 No alias clade F phosphatase 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 54 218
No external refs found!