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Description : (q7x6j9|exb17_orysa : 96.7) Expansin-B17 precursor (OsEXPB17) (Beta-expansin-17) (OsaEXPb1.13) - Oryza sativa (Rice) & (at4g28250 : 94.7) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 2090 Blast hits to 2086 proteins in 147 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 5; Plants - 2024; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description)
Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00009595-RA | |
| Cluster | HCCA clusters: Cluster_388 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g65680 | No alias | Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6] | 0.04 | Orthogroups_2024-Update | |
| Bradi3g33130 | No alias | expansin B2 | 0.02 | Orthogroups_2024-Update | |
| Brara.A01798.1 | No alias | beta-class expansin | 0.03 | Orthogroups_2024-Update | |
| Brara.E00482.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.K00035.1 | No alias | beta-class expansin | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G059785 | No alias | expansin B2 | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G166546 | No alias | expansin B2 | 0.04 | Orthogroups_2024-Update | |
| Glyma.12G111200 | No alias | expansin B3 | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G054250.9 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G073140.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G105170.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| LOC_Os03g01270 | No alias | expansin precursor, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os10g40710 | No alias | expansin precursor, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| PSME_00007984-RA | No alias | (at2g20750 : 186.0) member of BETA-EXPANSINS. Naming... | 0.05 | Orthogroups_2024-Update | |
| PSME_00010585-RA | No alias | (at2g20750 : 194.0) member of BETA-EXPANSINS. Naming... | 0.04 | Orthogroups_2024-Update | |
| PSME_00014538-RA | No alias | (q6h676|exb11_orysa : 160.0) Expansin-B11 precursor... | 0.04 | Orthogroups_2024-Update | |
| PSME_00015392-RA | No alias | (at2g20750 : 239.0) member of BETA-EXPANSINS. Naming... | 0.05 | Orthogroups_2024-Update | |
| PSME_00022853-RA | No alias | (at2g20750 : 210.0) member of BETA-EXPANSINS. Naming... | 0.03 | Orthogroups_2024-Update | |
| PSME_00038846-RA | No alias | (at2g20750 : 157.0) member of BETA-EXPANSINS. Naming... | 0.05 | Orthogroups_2024-Update | |
| PSME_00039911-RA | No alias | (at2g20750 : 117.0) member of BETA-EXPANSINS. Naming... | 0.04 | Orthogroups_2024-Update | |
| Potri.019G101900 | No alias | expansin B3 | 0.02 | Orthogroups_2024-Update | |
| Pp1s251_59V6 | No alias | beta-expansin 3 | 0.04 | Orthogroups_2024-Update | |
| Pp1s313_58V6 | No alias | beta-expansin 3 | 0.02 | Orthogroups_2024-Update | |
| Pp1s313_59V6 | No alias | beta-expansin 3 | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G300400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G301600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Predicted GO |
| MF | GO:0004420 | hydroxymethylglutaryl-CoA reductase (NADPH) activity | IEP | Predicted GO |
| MF | GO:0008172 | S-methyltransferase activity | IEP | Predicted GO |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0015267 | channel activity | IEP | Predicted GO |
| BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009009 | RlpA-like_DPBB | 81 | 121 |
| No external refs found! |