1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00009640-RA

PSME_00009640-RA


Description : (at5g57250 : 386.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink). & (q76c99|rf1_orysa : 298.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 772.0) & (original description: no original description)


Gene families : OG_42_0006661 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006661_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009640-RA
Cluster HCCA clusters: Cluster_613

Target Alias Description ECC score Gene Family Method Actions
PSME_00031241-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00035708-RA No alias (at4g11690 : 80.9) Pentatricopeptide repeat (PPR-like)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 8 57
IPR002885 Pentatricopeptide_repeat 78 127
IPR002885 Pentatricopeptide_repeat 324 371
IPR002885 Pentatricopeptide_repeat 263 302
IPR002885 Pentatricopeptide_repeat 640 678
IPR002885 Pentatricopeptide_repeat 183 232
IPR002885 Pentatricopeptide_repeat 790 839
IPR002885 Pentatricopeptide_repeat 464 512
IPR002885 Pentatricopeptide_repeat 720 769
IPR002885 Pentatricopeptide_repeat 569 616
IPR002885 Pentatricopeptide_repeat 152 181
IPR002885 Pentatricopeptide_repeat 693 715
IPR002885 Pentatricopeptide_repeat 425 454
IPR002885 Pentatricopeptide_repeat 389 420
No external refs found!